PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141638_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 706aa    MW: 73216.7 Da    PI: 6.9123
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141638_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-11272328155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  GRMZM2G141638_P01 272 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 328
                        57*******************4444.2455535555.779999**************98 PP

2AP246.78.1e-15371422155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GRMZM2G141638_P01 371 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 422
                        57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-8272328IPR001471AP2/ERF domain
CDDcd000181.52E-17272338No hitNo description
SuperFamilySSF541711.11E-14272338IPR016177DNA-binding domain
SMARTSM003806.2E-22273342IPR001471AP2/ERF domain
PROSITE profilePS5103217.28273336IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-12273337IPR001471AP2/ERF domain
PRINTSPR003673.8E-6274285IPR001471AP2/ERF domain
PfamPF008471.0E-9371422IPR001471AP2/ERF domain
CDDcd000181.14E-22371432No hitNo description
SuperFamilySSF541711.11E-17371432IPR016177DNA-binding domain
SMARTSM003801.5E-33372436IPR001471AP2/ERF domain
PROSITE profilePS5103219.045372430IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18372431IPR001471AP2/ERF domain
PRINTSPR003673.8E-6412432IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQELPPS QTTDSTLISA ATADHVSGDV CFNIPQDWSM RGSELSALVA  60
EPKLEDFLGG ISFSEQHHKS NCNLIPSTSS TVCYASSAAS TGYHHQLYQP TSSALHFADS  120
VMVASSAGVH DGGSMLSAAA ANGVAGAASA NGGGIGLSMI KNWLRSQPAP MQPRAAAAEG  180
AQGLSLSMNM AGTTQGAAGM PLLAGERARA PESVSTSAQG GAVVVTAPKE DSGGSGVAGA  240
LVAVSTDTGG SGGASADNTA RKTVDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  300
TRKGRQGGYD KEEKAARAYD LAALKYWGAT TTTNFPVSNY EKELEDMKHM TRQEFVASLR  360
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF  420
RGLNAVTNFD MSRYDVKSIL DSSALPIGSA AKRLKEAEAA ASAQHHHAGV VSYDVGRIAS  480
QLGDGGALAA AYGAHYHGAA WPTIAFQPGA ATTGLYHPYA QQPMRGGGWC KQEQDHAVIA  540
AAHSLQDLHH LNLGAAGAHD FFSAGQQAAA AAAMHGLASI DSASLEHSTG SNSVVYNGGV  600
GDSNGASAVG SGGGYMMPMS AAGATTTSAM VSHEQMHARA YDEAKQAAQM GYESYLVNAE  660
NNGGGRMSAW GTVVSAAAAA AASSNDNIAA DVGHGGAQLF SVWNDT
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141638
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141638_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408921e-176AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674696.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-131BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A1D6N4F30.0A0A1D6N4F3_MAIZE; AP2-like ethylene-responsive transcription factor BBM
STRINGGRMZM2G141638_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-115AP2 family protein