PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139535_P01
Common NameHSF21, LOC100283948
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 298aa    MW: 32258.3 Da    PI: 10.1326
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139535_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.83.1e-32201122103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+++++e++ ++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g++ l
  GRMZM2G139535_P01  20 FLTKTHQMVEERGTDEVISWAEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANDNFRRGEQGL 102
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l+ i+r+ks+
  GRMZM2G139535_P01 103 LSGIRRRKST 112
                        *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5316109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-3116109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-172043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-2820109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-175870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-177183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGEAAAAVAA SKRGGGPAPF LTKTHQMVEE RGTDEVISWA EQGRSFVVWK PVELARDLLP  60
LHFKHCNFSS FVRQLNTYGF RKVVPDRWEF ANDNFRRGEQ GLLSGIRRRK STALQMSKSG  120
SGGSGGVNAT FPPPLPPPPP ASATTSGVHE RSSSSASSPP RAPDLASENE QLKKDNHTLS  180
AELAQARRHC EELLGFLSRF LDVRQLDLRL LMQEDVRAGA SDDGAQRRAH AVASQLERGG  240
GEEGKSVKLF GVLLKDAARK RGRCEEAAAS ERPIKMIRVG EPWVGVPSSG PGRCGGEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-20201135109Heat shock factor protein 2
5d8l_B2e-20201135109Heat shock factor protein 2
5d8l_D2e-20201135109Heat shock factor protein 2
5d8l_F2e-20201135109Heat shock factor protein 2
5d8l_H2e-20201135109Heat shock factor protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.100320.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139535
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139535_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277540.0KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150318.10.0heat shock factor protein 4
SwissprotQ67TP91e-132HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A060D1R40.0A0A060D1R4_MAIZE; HSF transcription factor (Fragment)
STRINGGRMZM2G139535_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-56heat shock factor 4