PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139372_P05
Common NameLOC100274330, ZEAMMB73_583232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 440aa    MW: 46650.7 Da    PI: 4.2287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139372_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12181224755
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        e+Er+RR+++N+++ +Lr+l+P+ +      K++ a+iL  A++YI  Lq
  GRMZM2G139372_P05 181 EAERKRRKKLNERLYKLRSLVPNiS------KMDRAAILGDAIDYIVGLQ 224
                        89*********************66......***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-17172235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-16180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-13181228No hitNo description
Gene3DG3DSA:4.10.280.107.0E-16181235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10181224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020126anatomytassel inflorescence
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVQEPGSSGG PRTRLLVPVA GGLVELFAAR YMAEEEQMAE LVMAQCGVPS GGEGGAWPPG  60
FAWDGGASDA SRGMYGDAVP PSLSLFDAAG SVAADPFQAV QQAPGAGGGG VDDVAGWQYA  120
AAAGSELEAV QLQQEQQPRD ADSGSEVSDM QGDPEDDGDG DAQGRGGGKG GGKRQQCKNL  180
EAERKRRKKL NERLYKLRSL VPNISKMDRA AILGDAIDYI VGLQNQVKAL QDELEDPADG  240
AGAPDVLLDH PPPASLVGLE NDESPPTSHQ HPLAGTKRAR AAAEEEEEEK GNDMEPQVEV  300
RQVEANEFFL QMLCERRPGR FVQIMDSIAD LGLEVTNVNV TSHESLVLNV FRAARRDNEV  360
AVQADRLRDS LLEVMREPYG VWSSSAPPVG MSGSGIADVK HDSVDMKLDG IIDGQAAPSV  420
AVGVSEDHYG GYNHLLQYLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RGGGKGGGK
2182189ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.428970.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139372
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139372_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882990.0BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds.
GenBankBT0880900.0BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds.
GenBankBT0688360.0BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds.
GenBankBT0677850.0BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
GenBankBT0427910.0BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142164.10.0putative HLH DNA-binding domain superfamily protein
SwissprotQ6YUS31e-119TDR_ORYSJ; Transcription factor TDR
TrEMBLK7USG10.0K7USG1_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G139372_P070.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-37bHLH family protein