PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139372_P02
Common NameLOC100274330, ZEAMMB73_583232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 557aa    MW: 58886.3 Da    PI: 4.2586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139372_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12298341755
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        e+Er+RR+++N+++ +Lr+l+P+ +      K++ a+iL  A++YI  Lq
  GRMZM2G139372_P02 298 EAERKRRKKLNERLYKLRSLVPNiS------KMDRAAILGDAIDYIVGLQ 341
                        89*********************66......***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-17289352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-16297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10298341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-16298352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.32E-13298345No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MGGGVHHHHP CVAADGDGAG AGPGPASVEA ALRPLVGVDA WDYCVYWRLS PDQRFLEMAG  60
FCCSSQFEAQ LPALGDLPPS IQLDSSSAGM HAEAMVSNQP IWQSSRVPEL QTGYSSGMVQ  120
EPGSSGGPRT RLLVPVAGGL VELFAARYMA EEEQMAELVM AQCGVPSGGE GGAWPPGFAW  180
DGGASDASRG MYGDAVPPSL SLFDAAGSVA ADPFQAVQQA PGAGGGGVDD VAGWQYAAAA  240
GSELEAVQLQ QEQQPRDADS GSEVSDMQGD PEDDGDGDAQ GRGGGKGGGK RQQCKNLEAE  300
RKRRKKLNER LYKLRSLVPN ISKMDRAAIL GDAIDYIVGL QNQVKALQDE LEDPADGAGA  360
PDVLLDHPPP ASLVGLENDE SPPTSHQHPL AGTKRARAAA EEEEEEKGND MEPQVEVRQV  420
EANEFFLQML CERRPGRFVQ IMDSIADLGL EVTNVNVTSH ESLVLNVFRA ARRDNEVAVQ  480
ADRLRDSLLE VMREPYGVWS SSAPPVGMSG SGIADVKHDS VDMKLDGIID GQAAPSVAVG  540
VSEDHYGGYN HLLQYLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281289RGGGKGGGK
2299306ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.428970.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139372
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139372_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882990.0BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds.
GenBankBT0880900.0BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds.
GenBankBT0688360.0BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds.
GenBankBT0677850.0BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
GenBankBT0427910.0BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676873.10.0PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X1
SwissprotQ6YUS31e-165TDR_ORYSJ; Transcription factor TDR
TrEMBLC0PKL70.0C0PKL7_MAIZE; Putative HLH DNA-binding domain superfamily protein isoform 1
STRINGGRMZM2G139372_P070.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-36bHLH family protein