PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G139082_P01
Common Namehscf1, ZEAMMB73_461399, Zm.123
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 488aa    MW: 52297.4 Da    PI: 6.196
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G139082_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.8e-15139198155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GRMZM2G139082_P01 139 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 198
                        57*******************666664477446*************************98 PP

2AP247.35e-15241292155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GRMZM2G139082_P01 241 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 292
                        57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-12139198IPR001471AP2/ERF domain
CDDcd000181.14E-20139208No hitNo description
SuperFamilySSF541711.18E-17139208IPR016177DNA-binding domain
PROSITE profilePS5103219.23140206IPR001471AP2/ERF domain
SMARTSM003804.6E-30140212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-16140207IPR001471AP2/ERF domain
PRINTSPR003672.0E-6141152IPR001471AP2/ERF domain
PfamPF008476.2E-10241292IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18241302IPR016177DNA-binding domain
CDDcd000185.66E-23241302No hitNo description
PROSITE profilePS5103219.045242300IPR001471AP2/ERF domain
SMARTSM003801.5E-33242306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18242301IPR001471AP2/ERF domain
PRINTSPR003672.0E-6282302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSGTPLGD EQGAVEESPR TVEDFLGGVG  60
GAGAPPQPAA AADQDHQLVC GELGSITARF LRHYPAAPAG TTVENPGAVT VAAMSSTDVA  120
GAESDQARRP AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD  180
KEEKAARAYD LAALKYWGPT TTTNFPVSNY EKELEEMKSM TRQEFIASLR RKSSGFSRGA  240
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD  300
MSRYDVESIL SSDLPVGGGA SGRAPAKFPL DSLQPGSAAA MMLAGAAAAS QATMPPSEKD  360
YWSLLALHYQ QQQEQERQFP ASAYEAYGSG GVNVDFTMGT SSGNNNNNTG SGVMWGATTG  420
AVVVGQQDSS GKQGNGYASN IPYAAAAMVS GSAGYEGSTG DNGTWVTTTT SSNTGTAPHY  480
YNYLFGME
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1230.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G139082
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G139082_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400030.0BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106068.20.0uncharacterized protein LOC103638861
SwissprotQ6PQQ31e-129AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1D6P5F40.0A0A1D6P5F4_MAIZE; Heat shock complementing factor1
STRINGGRMZM2G139082_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-125AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]