PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G136494_P01
Common NameZEAMMB73_700752, Zm.23984
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 419aa    MW: 44394.2 Da    PI: 8.5301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G136494_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.4e-07176198223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +CpdCg++F r+++L+ H++  H
  GRMZM2G136494_P01 176 PCPDCGEVFVRQESLQLHQSIrH 198
                        7******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-4174194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.328175203IPR007087Zinc finger, C2H2
PROSITE patternPS000280175198IPR007087Zinc finger, C2H2
SuperFamilySSF563991.53E-18200247No hitNo description
Gene3DG3DSA:3.90.228.101.7E-10202418IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.53E-18274418No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MVERPGRSAG VREANKTSAA AMVKTTTTTN KEELESPSYR LAAFKSLFSC RNSHARPRAP  60
DTGTGSRSKR LGCSAPSICK LKDDSVPVPP KETTGTASAG EPCKRRASVS GSSDRCVKKP  120
QCGAGSNKQL QRGGSSSSSG GSSFRAGMQL RRLSGCYECH MVVAGSASMR ATTICPCPDC  180
GEVFVRQESL QLHQSIRHAV SELGTDDTSR NIIEIIFQSS WLKKQSPVCK VDRILKVNNT  240
PRTLARFEEY RDAVKARAGA EQLAVAAANS NRHPRCTADG NELLRFHCAT LACSLGLNGA  300
THLCDAAGTC AACGIIRDGF SSGGVLTMAT SGRAHDAAEA GAGLDEETTP RAMLVCRVIA  360
GRVKRPKEAV PEEEAVADAA EESEYDSVAG SAGVYSNLEE LLVFNPRAIL PCFVVVYKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.239840.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G136494
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G136494_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682180.0EU968218.1 Zea mays clone 316720 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401257.10.0uncharacterized protein LOC109942996
TrEMBLA0A3L6GBE20.0A0A3L6GBE2_MAIZE; Uncharacterized protein
TrEMBLK7UNG90.0K7UNG9_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G136494_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-85C2H2-like zinc finger protein