PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G135461_P01
Common NameZEAMMB73_045179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 132aa    MW: 15089.2 Da    PI: 7.592
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G135461_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP58.62.6e-181572270
                TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssa 70
                       +Rls+ +a++f +Lqd+LGfdk+skt++WLl q+kp i+ l++         +++s+
  GRMZM2G135461_P01  1 MRLSVGVAREFLALQDRLGFDKASKTLNWLLAQSKPPIDCLVDAaeqilgvgKTTSQ 57
                       8****************************************9995555544422222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.403141IPR017887Transcription factor TCP subgroup
PfamPF036343.3E-16175IPR005333Transcription factor, TCP
SMARTSM002713.1E-1043100IPR001623DnaJ domain
PROSITE profilePS5007612.73544111IPR001623DnaJ domain
PRINTSPR006251.2E-94664IPR001623DnaJ domain
PfamPF002261.2E-124785IPR001623DnaJ domain
SuperFamilySSF465651.05E-134783IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.4E-144788IPR001623DnaJ domain
CDDcd062572.11E-124780IPR001623DnaJ domain
PRINTSPR006251.2E-96479IPR001623DnaJ domain
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MRLSVGVARE FLALQDRLGF DKASKTLNWL LAQSKPPIDC LVDAAEQILG VGKTTSQQEI  60
KKAYHKLALR LHPDKNPGDE VTEADIEEFE AKYRGSDYEK TDLKDLYTKY KGNMNRNNYL  120
LYHIVKSETV LL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G135461
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G135461_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9609471e-77EU960947.1 Zea mays clone 229801 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025604433.11e-27chaperone protein dnaJ 6 isoform X2
TrEMBLA0A1D6KDY48e-61A0A1D6KDY4_MAIZE; Chaperone protein dnaJ 6
STRINGGRMZM2G135461_P011e-93(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.17e-13TCP family protein