PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G133398_P03
Common Namevp1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 691aa    MW: 73248.6 Da    PI: 6.2499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G133398_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.7e-19518614295
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                        +kvl++sdv+++gr+vlpkk ae h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ eFv++n+L+egDf+v++  ++ 
  GRMZM2G133398_P03 518 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--SDv 606
                        79*************************999***********7778*******99777777777777.********************..555 PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        ++++++++
  GRMZM2G133398_P03 607 KSGKYLIR 614
                        88877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-27508621IPR015300DNA-binding pseudobarrel domain
CDDcd100151.89E-32515616No hitNo description
SuperFamilySSF1019363.01E-22516612IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-18517619IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532517619IPR003340B3 DNA binding domain
PfamPF023626.1E-16518613IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MEASAGSSPP HSQENPPEHG GDMGGAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS  60
STFSSNSSSN SSSAYTNTAG RAGGEPSEPA SAGEGFDALD DIDQLLDFAS LSMPWDSEPF  120
PGVSMMLENA MSAPPQPVGD GMSEEKAVPE GTTGGEEACM DASEGEELPR FFMEWLTSNR  180
ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GTMQLLKLIL TWVQNHHLQR KRPRDVMEEE  240
AGLHVQLPSP VANPPGYEFP AGGQDMAAGG GTSWMPHQQA FTPPAAYGGD AVYPSAAGQQ  300
YSFHQGPSTS SVVVNSQPFS PPPVGDMHGA NMAWPQQYVP FPPPGASTGS YPMPQPFSPG  360
FGGQYAGAGA GHLSVAPQRM AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSLGQIQA  420
SVHLQEPSPR STHSGPVTPS AGGWGFWSPS SQQQVQNPLS KSNSSRAPPP SLEAAAVAPQ  480
TKPAPAGARQ DDIHHRLAAA SDKRQGAKAD KNLRFLLQKV LKQSDVGSLG RIVLPKKEAE  540
VHLPELKTRD GISIPMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGEFVR SNELQEGDFI  600
VIYSDVKSGK YLIRGVKVRP PPAQEQGSGS SGGGKHRPLC PAGPGRAAAA GAPEDAVVDG  660
VSGACKGRSP EGVRRVRQQG AGAMSQMAVS I
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.240.0embryo| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G133398
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G133398_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609940.0BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105540.10.0regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLA0A096S7A40.0A0A096S7A4_MAIZE; Uncharacterized protein
STRINGGRMZM2G133398_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-67B3 family protein