PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G133398_P02
Common Namevp1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 690aa    MW: 73120.4 Da    PI: 6.1367
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G133398_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.8e-18518613295
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                        +kvl++sdv+++gr+vlpk+  e h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ eFv++n+L+egDf+v++  ++ 
  GRMZM2G133398_P02 518 QKVLKQSDVGSLGRIVLPKEA-EVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--SDv 605
                        79****************996.6777*999***********7778*******99777777777777.********************..555 PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        ++++++++
  GRMZM2G133398_P02 606 KSGKYLIR 613
                        88877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-25508620IPR015300DNA-binding pseudobarrel domain
CDDcd100151.81E-30515615No hitNo description
SuperFamilySSF1019361.44E-19516611IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.334517618IPR003340B3 DNA binding domain
SMARTSM010198.4E-15517618IPR003340B3 DNA binding domain
PfamPF023627.1E-15518612IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MEASAGSSPP HSQENPPEHG GDMGGAPAEE IGGEAADDFM FAEDTFPSLP DFPCLSSPSS  60
STFSSNSSSN SSSAYTNTAG RAGGEPSEPA SAGEGFDALD DIDQLLDFAS LSMPWDSEPF  120
PGVSMMLENA MSAPPQPVGD GMSEEKAVPE GTTGGEEACM DASEGEELPR FFMEWLTSNR  180
ENISAEDLRG IRLRRSTIEA AAARLGGGRQ GTMQLLKLIL TWVQNHHLQR KRPRDVMEEE  240
AGLHVQLPSP VANPPGYEFP AGGQDMAAGG GTSWMPHQQA FTPPAAYGGD AVYPSAAGQQ  300
YSFHQGPSTS SVVVNSQPFS PPPVGDMHGA NMAWPQQYVP FPPPGASTGS YPMPQPFSPG  360
FGGQYAGAGA GHLSVAPQRM AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSLGQIQA  420
SVHLQEPSPR STHSGPVTPS AGGWGFWSPS SQQQVQNPLS KSNSSRAPPP SLEAAAVAPQ  480
TKPAPAGARQ DDIHHRLAAA SDKRQGAKAD KNLRFLLQKV LKQSDVGSLG RIVLPKEAEV  540
HLPELKTRDG ISIPMEDIGT SRVWNMRYRF WPNNKSRMYL LENTGEFVRS NELQEGDFIV  600
IYSDVKSGKY LIRGVKVRPP PAQEQGSGSS GGGKHRPLCP AGPGRAAAAG APEDAVVDGV  660
SGACKGRSPE GVRRVRQQGA GAMSQMAVSI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.240.0embryo| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G133398
Function -- GeneRIF ? help Back to Top
  1. The factors that regulate Vp1 expression was studied; transcript levels were monitored in maturing embryos placed in culture under different conditions.
    [PMID: 17208960]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G133398_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609940.0BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673439.10.0PREDICTED: regulatory protein viviparous-1 isoform X1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLC0HF880.0C0HF88_MAIZE; Uncharacterized protein
TrEMBLK4JFM50.0K4JFM5_MAIZE; ABI3VP1-type transcription factor (Fragment)
STRINGGRMZM2G133398_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-64B3 family protein
Publications ? help Back to Top
  1. Cao X, et al.
    Abscisic acid and stress signals induce Viviparous1 expression in seed and vegetative tissues of maize.
    Plant Physiol., 2007. 143(2): p. 720-31
    [PMID:17208960]
  2. McCarty DR, et al.
    The Viviparous-1 developmental gene of maize encodes a novel transcriptional activator.
    Cell, 1991. 66(5): p. 895-905
    [PMID:1889090]