PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G132693_P01
Common NameLOB30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 298aa    MW: 32356.3 Da    PI: 7.7958
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G132693_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28.6e-314104196
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+++p++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql
  GRMZM2G132693_P01   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQL 95 
                        6*************************99**************************************************************** PP

             DUF260  88 eqlkaelal 96 
                        +q+++e +l
  GRMZM2G132693_P01  96 CQAAVESVL 104
                        ****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.3E-901297IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.6433109IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLITAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ESVLRGIPIA QPPPTATAVP  120
PLRSCDIRHV ARREAGRGAV DAGLHRMANS SRGQFKRSGA QHRSADSGSI ELVFSQPSAA  180
SSMLVDIRQA QPLNWAPRHP SPHQYYSASH DDDAVRESDD SKASVDTVDV SHVSQSEPAE  240
PPRESNERAD GLDLTLGLPP TAHKVERLET SSDVDDDQTS HRGEPTKLGF AMADSRAR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G132693
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G132693_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-131FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673774.10.0LOB domain-containing protein 40
TrEMBLA0A1D6MM360.0A0A1D6MM36_MAIZE; LOB domain-containing protein 42
STRINGGRMZM2G132693_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-67LOB domain-containing protein 40