PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G130374_P01
Common NameWRKY3, Zm.86666
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 374aa    MW: 39509.9 Da    PI: 10.6165
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G130374_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30307364359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeH h+
  GRMZM2G130374_P01 307 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHGHT 364
                        9*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.1E-18255303IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.1E-33293365IPR003657WRKY domain
PROSITE profilePS5081129.539300363IPR003657WRKY domain
SuperFamilySSF1182901.7E-26303365IPR003657WRKY domain
SMARTSM007741.1E-36305365IPR003657WRKY domain
PfamPF031064.8E-26307363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEEVEVANRA AVESCHRVLA LLSQQRDPAL LKSVASETAE ACAKFRKVAA LLGSGVGHAR  60
GRFSRRVRPL GLVGHKSPVG SGGNNPVEML PSAAAVTSPS PSTSYPPQMR ARLNGVPDPR  120
GLDMACSSSS KSGGVGGGGA HPFGGAPKLV QPLSVQFQIG NVAHRYPFHQ QPPSRQKLQA  180
AEMFRRSSSG TISLKFDSPI PSGGGGAAGT VSFVSSLSMD GSVGVASLDG KRPFHLVGTP  240
VAASDTAADA HRAPKRRCTC RGGEEDGRGN KCGTSGRCHC SKRRKLRIKR SIKVPAISNK  300
VADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP AMLIVTYEGE  360
HGHTQLPAQP STQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20293367275WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256RAPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.866660.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G130374
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G130374_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0372350.0BT037235.1 Zea mays full-length cDNA clone ZM_BFb0160A01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136596.10.0uncharacterized protein LOC100216719
TrEMBLB4FJE70.0B4FJE7_MAIZE; Putative WRKY transcription factor 74
STRINGGRMZM2G130374_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-63WRKY DNA-binding protein 21