PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G128807_P02
Common Namepco128421
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 431aa    MW: 46263.1 Da    PI: 8.4844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G128807_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-11202244754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  GRMZM2G128807_P02 202 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 244
                        79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.32E-5188249No hitNo description
PROSITE profilePS5088815.269195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16199268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14202261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-9202244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MALASPSLPL PTTPPPSSQA IAAASFCACP LAIFEYDEKA VMELDEQAFL EEILSLRRDA  60
WDCNAMGDFF APAAMDCTFQ DRHHQAPTVS VLPTFTASYA QPQPQPAAAP GFDCLSEVYG  120
AAAFGGPNAG DYGGEMGFLD VVEPKAASAA LVDGAAGLGA CKVEPGLAES GGAFGAGAGA  180
APPPALASKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS VVPKISKMDR TSILGDTIDY  240
MKELLERIKL LQEEIGQQQE EAPGMLSVFR ELNPNEMVAR NTPKVREEAA DAADAIGGNV  300
RAEMLLMAPA VRRGAEGGRR HPGGDLLRRQ AGAAAVHGEH AGHARARHPA VRRQLLQRLR  360
HARLLLRGSD HRLSIGSLPY THSFCPRIGC KAMRRNKFAP SMLSQMQREM ISADAIKQEL  420
FKNAGYGGGC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189209KKRVEGMPSKNLMAERRRRKR
2203210ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.791090.0ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G128807
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G128807_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9635380.0EU963538.1 Zea mays clone 263876 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.11e-138uncharacterized protein LOC100274388
RefseqXP_002437610.11e-138hypothetical protein SORBIDRAFT_10g030470
TrEMBLA0A096S4880.0A0A096S488_MAIZE; Uncharacterized protein
STRINGGRMZM2G128807_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26361130
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.21e-26beta HLH protein 93