PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125969_P01
Common Namecl30385_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 375aa    MW: 42043.7 Da    PI: 4.4634
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125969_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.4e-35521422101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++ ++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++l
  GRMZM2G125969_P01  52 FLTKTYDMVDDSDTDLIVSWSATNNSFVVWDPHAFATVLLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHL 134
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXX CS
       HSF_DNA-bind  94 lekikrkk 101
                        l++i+r+k
  GRMZM2G125969_P01 135 LKNIRRRK 142
                        ******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.11E-3648141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-6248141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.8E-3948141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-195275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-19103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDSTLNQVKE ESHGEGGDLM AGTVEAADGP SAAVAAAPKP MEGLHDPGPP PFLTKTYDMV  60
DDSDTDLIVS WSATNNSFVV WDPHAFATVL LPRHFKHNNF SSFVRQLNTY GFRKVDPDRW  120
EFANEGFLRG QRHLLKNIRR RKPPAQNATN QQSIGPYLEV GHFGYDAEID MLKRDKQLLM  180
AEVVKLRQEQ QNTKANLKAM EDRLQGTEQK QQQMMAFLAR VMRNPEFLKH LVSQNEMRKE  240
LQDAISKKRR RRIDQGPEAD DLGASSSLEQ GSPVLFNAQD PVEFLVDGIP ADLESPAFDG  300
HGLIGPHDID IDIDIGSTSE QQQDMPQEDL NDNFWEQLLN EGLGEENDSP VIEDDMNVLS  360
EKMGYLNSDG PTSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-27161414129Heat shock factor protein 1
5d5v_B5e-27161414129Heat shock factor protein 1
5d5v_D5e-27161414129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251KKRRRR
2247252KRRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.153250.0ear| embryo| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125969
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125969_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9567000.0EU956700.1 Zea mays clone 1571069 heat shock factor protein HSF30 mRNA, complete cds.
GenBankBT0560060.0BT056006.1 Zea mays full-length cDNA clone ZM_BFc0120E04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146716.10.0uncharacterized protein LOC100280318
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLK4JEA80.0K4JEA8_MAIZE; HSF-type transcription factor (Fragment)
TrEMBLB6SVD50.0B6SVD5_MAIZE; Heat shock factor protein HSF30
STRINGGRMZM2G125969_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-103heat shock transcription factor A6B
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]