PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G120151_P01
Common NameLOC100281328, TCP23
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 298aa    MW: 30902.7 Da    PI: 8.3073
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G120151_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.87.1e-2960129371
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.s 71 
                        g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+ +i++l+ ++++++ +
  GRMZM2G120151_P01  60 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQDEIDKLPPLQFPPQgQ 129
                        78*************************************************************8888831 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-2661122IPR005333Transcription factor, TCP
PROSITE profilePS5136929.44861119IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007015developmental stageradicle emergence stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MISGNLNNEE LGGGGCTKAE GPGAAGGAGA VVAKSPVLSS SRHWPPSTES RIVRVSRVFG  60
GKDRHSKVRT VKGLRDRRVR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLD AAQDEIDKLP  120
PLQFPPQGQD LVAHLPPSMV APFANVAADR AAAAAAAANA SAAMAEGGKR HCHGGIKGLM  180
GMGLNNSIGL ANATMPLAHG LYYTPGESWT NGGNAAVHDH QVSHGGTSPQ TVAHHSPFSS  240
LLSLAAPGPQ LVFYSPEGGG FAMKEATDHQ FAVDSLDHSQ GQLSLSSARS FLHPGNQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2066120155Putative transcription factor PCF6
5zkt_B5e-2066120155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.58300.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G120151
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G120151_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0606840.0BT060684.1 Zea mays full-length cDNA clone ZM_BFb0034B20 mRNA, complete cds.
GenBankBT0671520.0BT067152.1 Zea mays full-length cDNA clone ZM_BFb0213O04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147718.10.0uncharacterized LOC100281328
TrEMBLC0HEC80.0C0HEC8_MAIZE; TCP transcription factor
STRINGGRMZM2G120151_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5