PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G120021_P01
Common NamebHLH71, LOC100272997
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 373aa    MW: 39635.5 Da    PI: 5.7917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G120021_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14178223454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+L
  GRMZM2G120021_P01 178 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKEL 223
                        699************************.....9****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.056174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-18178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-16178238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-12178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-14179228No hitNo description
SMARTSM003534.1E-15180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.91292369IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEDSSLFLQW AMSTLRHEQQ PAAAVNDDCS SEATFPSLQA LREASHAAEM VQELIGEAPA  60
NSWSSGDTTD GSIGGNSNSV PGPAAAAMEH DVWPAASSKT SPARRALSRS SSDTNPPVSW  120
NFSAAASAQL AGSADGMLPE FAPKSALPPD QAYGSPRARR AGLKSLAGSM SSAAYAQDHI  180
IAERKRREKI NQRFIELSTV IPGLKKMDKA TILSDATKYV KELHGKLKDL EAGGSNRRKS  240
IETVVLVKRP CLHAAPAPDD DASPLSASSG TPAETKTQLP EIEARFAENS VMVRIHCEDG  300
KGVAVKVLAE VEELHLSIIH ANVLPFVEGT LIITITAKVE EGFTVSAGEI VGRLNSALLH  360
NNEHNRCCNI ADE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
2183188RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.370680.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G120021
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G120021_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399630.0BT039963.1 Zea mays full-length cDNA clone ZM_BFc0054N17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140919.10.0putative HLH DNA-binding domain superfamily protein
TrEMBLB4FS750.0B4FS75_MAIZE; BHLH transcription factor
STRINGGRMZM2G120021_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1191336
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-34bHLH family protein