PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G119823_P02
Common NamebHLH108, LOC100281107, ZEAMMB73_595820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 262aa    MW: 29274.2 Da    PI: 5.6669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G119823_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.6e-145599655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  GRMZM2G119823_P02 55 ILMERDRRRKLNDKLYALRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 99
                       579*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1454998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.87E-1353103No hitNo description
SuperFamilySSF474591.31E-1653112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-125499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1655116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00893181244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDKYWEETQR YLEYEELSIY LEAQEDAMSC YDSSSPDGSI SHSSSSAAAC GNKNILMERD  60
RRRKLNDKLY ALRSVVPNIT KMDKASIIKD AIEYIQQLQV EERRVLQELR VLDDDTAAAA  120
TAQVECCDVD GGLLRREAER AKKMKRAQSV ASGAQSAPPP PPPPHVEVLE LRVSEVGDHV  180
LVVSVTCRKR RDAMARVCRA IEDLRLRVIT ANVTSVAGCH VHTVFVEVDK IDHIQVKNMI  240
EAALTLLDAP GSPHSSMSYY ET
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.101200.0meristem| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G119823
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G119823_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280260.0KJ728026.1 Zea mays clone pUT6163 bHLH transcription factor (bHLH108) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147498.11e-165DNA binding like
RefseqXP_008661887.11e-164PREDICTED: DNA binding like isoform X1
TrEMBLC0PEI40.0C0PEI4_MAIZE; BHLH transcription factor
STRINGSi010812m1e-115(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-47bHLH family protein