PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G119823_P01
Common NameLOC100281107, ZEAMMB73_595820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 329aa    MW: 37501.8 Da    PI: 9.1592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G119823_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.2e-051531703855
                        STCHHHHHHHHHHHHHHH CS
                HLH  38 lsKaeiLekAveYIksLq 55 
                        ++Ka+i + A+eYI++Lq
  GRMZM2G119823_P01 153 MDKASIIKDAIEYIQQLQ 170
                        79***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-7135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-5141183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDKYWEETQR YLEYEELRYE YELRTNEPPS PRAADTMRAP TEHSFIYPFL RRWWLQHLLG  60
GAGGRHVLLR LQLAGRLHLP LVVVGGGVRQ QEHPDGARPP PQAQRQALRA PQRRAEHHQG  120
KRRSRTHAAT DRRSSVPSSS VLSALYYIAC MQMDKASIIK DAIEYIQQLQ VEERRVLQEL  180
RVLDDDTAAA ATAQVECCDV DGGLLRREAE RAKKMKRAQS VASGAQSAPP PPPPPHVEVL  240
ELRVSEVGDH VLVVSVTCRK RRDAMARVCR AIEDLRLRVI TANVTSVAGC HVHTVFVEVR  300
RRWHGIWHHM GSGYSVFFSP FFILDDGYD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.101200.0meristem| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G119823
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G119823_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566110.0EU956611.1 Zea mays clone 1568093 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7TSK60.0K7TSK6_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G119823_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27531332
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.23e-27bHLH family protein