PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G116646_P02
Common Namegpm293
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 216aa    MW: 24018.1 Da    PI: 8.5042
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G116646_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY231.71.7e-7171795170
              YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh.ldeslkee.lleelkveeenlksnvekees.as 93 
                          +++vCyv+C+fCnt+lavsvP +s++++vtvrCGhC++llsvnl+  ++ l+ ++h l+e++k + +  +l+++++ +   ++  +s +s
  GRMZM2G116646_P02   7 APADHVCYVHCSFCNTVLAVSVPGNSMLNIVTVRCGHCANLLSVNLRALMHSLPEQDHqLQENIKVHgINGTLHDDHQYCGHLDQLGSSsSS 98 
                        5689**************************************************99974677777667666666666666555444333033 PP

              YABBY  94 tsvssekl..senedeevpr..vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        + ++   +  ++ne++ +++    +  rPPekrqrvPsaynrfikeei+rika+nPdi hreafs+aaknWah+P+ihfgl
  GRMZM2G116646_P02  99 RFRRLPVMcsPQNEQHLLQEqtLNNNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDINHREAFSTAAKNWAHYPNIHFGL 179
                        334444445444444433321134478****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-708179IPR006780YABBY protein
SuperFamilySSF470955.37E-8124173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.3E-4126173IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSSAQIAPAD HVCYVHCSFC NTVLAVSVPG NSMLNIVTVR CGHCANLLSV NLRALMHSLP  60
EQDHQLQENI KVHGINGTLH DDHQYCGHLD QLGSSSSSRF RRLPVMCSPQ NEQHLLQEQT  120
LNNNARPPEK RQRVPSAYNR FIKEEIRRIK ANNPDINHRE AFSTAAKNWA HYPNIHFGLD  180
DSGREGKKKL VDHEAAASVV AVAAAPTAAK KIQGFY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.24420.0aerial organ| embryo| endosperm| meristem| ovary| pedicel| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G116646
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G116646_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0684090.0BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442565.11e-116hypothetical protein SORBIDRAFT_08g022030
SwissprotQ2QM175e-84YAB6_ORYSJ; Protein YABBY 6
TrEMBLC0PJE01e-162C0PJE0_MAIZE; Uncharacterized protein
STRINGGRMZM2G116646_P021e-162(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22101236
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-53YABBY family protein