PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G115960_P03
Common NamebHLH68, LOC100382453
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 567aa    MW: 60404.1 Da    PI: 6.9388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G115960_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67e-16356402455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  GRMZM2G115960_P03 356 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 402
                        5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.20E-17349406No hitNo description
SuperFamilySSF474593.27E-20350410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-20356410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-13356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MSDSNDFVEL LWENGQAVVH GRRKQHPQAA FPPFTCGAAS SSRAQENQPG TTDPVSLFKT  60
GGLFADFSSG LDAARGNGDL DDTVPWIHCP IVEEDSAAPA PALAEGYSPD FFSELHAAAL  120
AAAAAETNLS PLPPPVQHNR STPVATTSRG PEPSKEAPRI PVPGPGSRPE PQSEFAATRK  180
PRPESGGEGL MNFSLFSRPA ALVRASLQRP PPPQTGTDKV SNVTTSTRVE STVLQSASGP  240
RIAPVFTDQR TAWSQSKEVR FSCAPALAAG NLHQDMPLGR PGNNMTPQGK METKKACEVA  300
VATPSLCSGN GESWREQKRK SQAECSASQD DDLDDESGGM RGSGGRGTKR SRTAEVHNLS  360
ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT LQLQVQMMAM GSGLCIPPML  420
LPRAMQLQIP SIAHFHHLGM GLGYGMGVLD MNSTAAVPFQ PIPGAHYTCP MIPGTPPQGL  480
GIGMPGTNTM PVFGLPGQAI HPSASSVQPF PSLAGLPVRP NLAPQVPAVM ANMVQEQQQG  540
VATQQQQSLN NEAQQKANTG DPQILQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360365ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.273060.0aerial organ| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G115960
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G115960_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9478040.0EU947804.1 Zea mays clone 360176 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701951.10.0PREDICTED: transcription factor APG-like isoform X2
TrEMBLA0A060D2B60.0A0A060D2B6_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G115960_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-35phytochrome interacting factor 3