PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G115960_P01
Common NameLOC100382453
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 398aa    MW: 42733.6 Da    PI: 7.9623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G115960_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09361393439
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKls 39 
                         hn  ErrRRdriN+++  L+el+P++   ++ + s
  GRMZM2G115960_P01 361 VHNLSERRRRDRINEKMRALQELIPNC---NKVRRS 393
                        5*************************8...666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-10349396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-8354392No hitNo description
PROSITE profilePS5088812.493357398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-7361392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-10361393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MCAWCRSDSN DFVELLWENG QAVVHGRRKQ HPQAAFPPFT CGAASSSRAQ ENQPGTTDPV  60
SLFKTGGLFA DFSSGLDAAR GNGDLDDTVP WIHCPIVEED SAAPAPALAE GYSPDFFSEL  120
HAAALAAAAA ETNLSPLPPP VQHNRSTPVA TTSRGPEPSK EAPRIPVPGP GSRPEPQSEF  180
AATRKPRPES GGEGLMNFSL FSRPAALVRA SLQRPPPPQT GTDKVSNVTT STRVESTVLQ  240
SASGPRIAPV FTDQRTAWSQ SKEVRFSCAP ALAAGNLHQD MPLGRPGNNM TPQGKMETKK  300
ACEVAVATPS LCSGNGESWR EQKRKSQAEC SASQDDDLDD ESGGMRGSGG RGTKRSRTAE  360
VHNLSERRRR DRINEKMRAL QELIPNCNKV RRSISTIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365370ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.273060.0aerial organ| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G115960
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G115960_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643990.0BT064399.1 Zea mays full-length cDNA clone ZM_BFc0165L03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168665.10.0putative HLH DNA-binding domain superfamily protein
TrEMBLC0P7Y00.0C0P7Y0_MAIZE; Uncharacterized protein
STRINGGRMZM2G115960_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-16phytochrome interacting factor 3