PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G115516_P01
Common NameTCP5, Zm.80385
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 386aa    MW: 39359.4 Da    PI: 9.8803
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G115516_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.84.9e-35611832123
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssss 81 
                         g+kdrhsk++T +g RdRRvRlsa++a++f+dLqd+LGfd++sk+ieWL+++a  ai +l+++            +              +
  GRMZM2G115516_P01  61 SGGKDRHSKVYTTKGIRDRRVRLSAPTAIQFYDLQDRLGFDQPSKAIEWLINAAASAIEKLPELdpaafaalpapgG------------ADA 140
                        689*************************************************************4443333322221............222 PP

                TCP  82 asnsssgkaaksaakskksqksaasalnlak.esrakararar 123
                        a+n++++++ +++a s+ s++s+ s l+l++ + r  a a+ r
  GRMZM2G115516_P01 141 AGNDKQQQQGSKSAGSSTSETSKGSELSLSRsDGRGGAAAQDR 183
                        2223333333444444455555555566666555544444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-3462182IPR005333Transcription factor, TCP
PROSITE profilePS5136931.77163121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEAAAVGDGA PAGRSHQGAK RARGGAVKGS ETEAAAWGQP PPLPPPPGPG AGSRIYRVGA  60
SGGKDRHSKV YTTKGIRDRR VRLSAPTAIQ FYDLQDRLGF DQPSKAIEWL INAAASAIEK  120
LPELDPAAFA ALPAPGGADA AGNDKQQQQG SKSAGSSTSE TSKGSELSLS RSDGRGGAAA  180
QDRVVTVAST SAQAASFTEL LTGVASAGAI SAGEHRQSWH QQPNVSAGAG ADRVGIAHNG  240
KGAHGLSTAT HAFSGPAAAK FGNAPPFGLV PAQPFDFTIP IEMPHFSLGQ DTSAASSSGA  300
GDYSLSFSMS SGFLGANRGT LQSNSQSNFS GHHHQQLQRL DGPLLFGHAH AAAAMHPASE  360
NQLTASAALQ LWDGLRHSGM KEKGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2468122155Putative transcription factor PCF6
5zkt_B2e-2468122155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.803850.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G115516
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G115516_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673300.0BT067330.1 Zea mays full-length cDNA clone ZM_BFc0013I03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147788.10.0uncharacterized LOC100281398
SwissprotQ10CE82e-95PCF6_ORYSJ; Transcription factor PCF6
TrEMBLC0PGB10.0C0PGB1_MAIZE; TCP transcription factor
STRINGGRMZM2G115516_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.24e-30TCP family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]