PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114998_P01
Common Namesi606039h07, ZEAMMB73_343804, Zm.4624
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Dof
Protein Properties Length: 367aa    MW: 37709.9 Da    PI: 9.0304
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114998_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.3e-3981142263
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                        kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  GRMZM2G114998_P01  81 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 142
                        7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-2580129IPR003851Zinc finger, Dof-type
PfamPF027012.4E-3383139IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05985139IPR003851Zinc finger, Dof-type
PROSITE patternPS01361087123IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDAAQWHQGP LGLGKPMEEM LMAGNAANPN PPPAAAPSAP GAQTQRGGGA PPPAAGAAAP  60
RAGATGGAAP AGTERRPRPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT  120
EGGSLRNVPV GGGSRKNKRS SSSAASSTSA AMSGTVSVKN PKLVHEGAHH DLNLAFPHHN  180
NGRALQPPEF PSSFPSLESS SVCYPGPAML GNGAAGRGMG ALSAMELLRS TGCYVPLQHV  240
QLGMPAEYAA PAGFTLGEFR IPPPPPPQSQ SVLGFSLDTH GTGGYSAGGL QESAVGRMLF  300
PFEDLKPAVT TAGGGASNDG ADHRQNDHRK DQAAGDGSSV TGGHETPGFW SNSLIGNGSS  360
NGGGGPW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.46240.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114998
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114998_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9738850.0EU973885.1 Zea mays clone 423574 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677042.10.0hypothetical protein
SwissprotB9F1L81e-111DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLK7UHV40.0K7UHV4_MAIZE; Dof zinc finger protein DOF2.5
STRINGGRMZM2G114998_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-33Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]