PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114660_P01
Common NameLOC100285829, ZEAMMB73_712738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 339aa    MW: 35068 Da    PI: 6.7035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114660_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05526223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ C+++F ++  L  H+r+H
  GRMZM2G114660_P01  5 TCKLCSRRFASPRALAGHMRSH 26
                       6********************9 PP

2zf-C2H211.50.00092259279223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +Cp+Cg++F +   L  H+r H
  GRMZM2G114660_P01 259 ECPHCGRVF-SGQALGEHMRFH 279
                        5********.888888888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.39426IPR007087Zinc finger, C2H2
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.59E-6526No hitNo description
PfamPF139128.8E-5627IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.59E-6183207No hitNo description
PfamPF139122.6E-8188212IPR007087Zinc finger, C2H2
SMARTSM00355110188208IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-5258279IPR007087Zinc finger, C2H2
SMARTSM003551.1258279IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGKNTCKLCS RRFASPRALA GHMRSHYMAA AKETAATATA AAAAAAAAAK QQISSASSAS  60
TSIAAADEEV GLMMTASTNG LRENPKRSLG VADVGFSDRE SETESTPPQA KRVNAAGIWG  120
EPEASSSLSE VATPEDVALS LMMLSRDSWP SGVLAEKDGS DDRSDDGYAP PAPPRRAPAP  180
VVEKRTQFQC VACKKVFRSY QALGGHRASN VRGGRGGCCA PPVAPPAPPP QPQPPLSPLP  240
EHRDGGEDED MNAKQQPREC PHCGRVFSGQ ALGEHMRFHV CASSPLAGTG TGTATASTTS  300
AATPASPTNS PSMIDLNVAP QSEEVEHSAV SDPRFNPGA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114660
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114660_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741900.0EU974190.1 Zea mays clone 442455 cys2/His2 zinc-finger transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152191.11e-167cys2/His2 zinc-finger transcription factor
TrEMBLA0A3L6F4S10.0A0A3L6F4S1_MAIZE; Zinc finger protein ZAT4
TrEMBLK7UHQ60.0K7UHQ6_MAIZE; Cys2/His2 zinc-finger transcription factor
STRINGGRMZM2G114660_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-16C2H2-like zinc finger protein