PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114444_P01
Common Namesi707057g02
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 277aa    MW: 30540.8 Da    PI: 5.5738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114444_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.4e-062401254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       RRd++N+ f+ L   l ++     ++++Ka+iL  +++ +k+L
  GRMZM2G114444_P01  2 RRDKLNEQFQDLGNALDPD----RPRNDKATILGDTIQMLKDL 40
                       ****************997....799***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.309140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-10263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-10259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-4244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRRDKLNEQF QDLGNALDPD RPRNDKATIL GDTIQMLKDL TTQVNKLKAE YTSLSEEACE  60
LTQEKNELRD EKASLKSEVD NLNNQYQQRM RVLYPWVGME PSVVMGPPPA YPYPVPVPIP  120
SGAVPMHPQL QTYHFFHSQA SGTIQNTCIP YMAYTQPCHP PTDQPSNQLN TPVAHSSSHR  180
SNSPAQDCRS KSSTLQQPSC GVRSSDAGDI ATDLELKTPG SSCQSHAEIA YNDSSSDLKT  240
KKHCIKQIND CTLTESSSSS RCSSNGPPDV SNSAIDE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.212000.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114444
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114444_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9755130.0EU975513.1 Zea mays clone 491262 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
GenBankBT0689460.0BT068946.1 Zea mays full-length cDNA clone ZM_BFb0018C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152439.10.0uncharacterized protein LOC100286079
TrEMBLB6UE480.0B6UE48_MAIZE; BHLH transcription factor
STRINGGRMZM2G114444_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-64bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]