PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G113078_P01
Common NameEREB117, ZEAMMB73_725008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 425aa    MW: 46085.6 Da    PI: 9.0787
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G113078_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.6e-1677136155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  GRMZM2G113078_P01  77 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 136
                        789******************888855666447*************************98 PP

2AP251.23.1e-16179230155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  GRMZM2G113078_P01 179 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 230
                        89****************99966...3.6***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1677145IPR016177DNA-binding domain
PfamPF008471.8E-1277136IPR001471AP2/ERF domain
SMARTSM003801.1E-2478150IPR001471AP2/ERF domain
PROSITE profilePS5103219.80978144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1578145IPR001471AP2/ERF domain
CDDcd000181.23E-23179238No hitNo description
SuperFamilySSF541712.81E-17179239IPR016177DNA-binding domain
PfamPF008473.9E-11179230IPR001471AP2/ERF domain
SMARTSM003801.7E-26180244IPR001471AP2/ERF domain
PROSITE profilePS5103218.979180238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17180238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MESSGMMLVK SEIESCYPGP SAAAPSVVIG GAPDGVEGGH RHQVVRRRRR EPPLLAPIGG  60
GGGIGKPLPS ITVKRSSRFR GVSRHRWTGR FEAHLWDKNS WNPTQRKKGK QVYLGAYDEE  120
EAAARAYDLA ALKYWGPTTY TNFPVMDYEK ELKVMENLTK EEYLASLRRK SSGFSRGVSK  180
YRGVARHHQN GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYKG VNAVTNFDLR  240
SYITWLKPSA PPAAFNREAL VAQAAPAEQL QLHHHPAETA QMLPRGNPFL LDHMTSSGGG  300
QEASMSTVSP GGMRRRGSST ALSLLLKSSM FRQLVEKNSD AEEGAGDGEA AAAAGSGHPG  360
PGDAYEYHNF FQGEAPPDMC DLFSSGGGGG GGHARVAGFH RDIAACYDGE GLDGWSGFGN  420
MPSLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110PTQRKKGKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1383180.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G113078
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G113078_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156675.10.0ethylene-responsive transcription factor WRI1
TrEMBLA0A1D6FWS40.0A0A1D6FWS4_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G113078_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-78AP2 family protein
Publications ? help Back to Top
  1. Kilaru A, et al.
    Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.
    BMC Plant Biol., 2015. 15: p. 203
    [PMID:26276496]