PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G112629_P01
Common NamebHLH76, LOC100272488
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 229aa    MW: 23639.9 Da    PI: 9.105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G112629_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-0734103655
                        HHHHHHHHHHHHHHHHHHHCTSCCC.......................TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkas....................kapskKlsKaeiLekAveYIksLq 55 
                        + +E++RR +++    +L +l+P+a                     ++++  ++  + L  A  YIk+L+
  GRMZM2G112629_P01  34 KDVEKNRRLHMKGLCLKLSSLIPPAAatthasllsdaasaavssnpGNKQDAVTQLDQLDSAAAYIKQLK 103
                        689*********************666*****************96666666****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.57528102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1032112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-833114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-434102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.004734108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MKSRRQSSGG SSGACAAGER NAHSSGGGCK LERKDVEKNR RLHMKGLCLK LSSLIPPAAA  60
TTHASLLSDA ASAAVSSNPG NKQDAVTQLD QLDSAAAYIK QLKERIEALK QRKAGCCNGG  120
GAATEAATAA AGSTGGGGGV RMPVIEVRCQ DGTLDVVLIS EAARPFKLHE VITVLEQEGA  180
EVVSASFSVI GDKIFYTVHS QALSPRIGVD AARVSQRLHA LLLAPTILV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.206560.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G112629
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G112629_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388180.0BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140429.11e-165putative HLH DNA-binding domain superfamily protein
TrEMBLB4FNY01e-165B4FNY0_MAIZE; BHLH transcription factor
STRINGGRMZM2G112629_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13451147
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.13e-17bHLH family protein