PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111146_P02
Common NameZm.96901
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 351aa    MW: 37342.3 Da    PI: 6.8291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111146_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-1488139155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+++P+a   + ++ + a+i+  A+e++k+L+
  GRMZM2G111146_P02  88 QRMTHIAVERNRRRQMNEYLAALRSIMPEA---YVQRGDQASIVGGAIEFVKELE 139
                        79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.04E-1486143No hitNo description
SuperFamilySSF474592.09E-1786157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.15487138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-1288139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1488152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSALVDALCA PPSDTALVYD TFNAANFLFD AAAFCDGAGI VAAPASAHQA PVEAQAATTS  60
AAPTTTARAR KRRRRPRSCK SREETETQRM THIAVERNRR RQMNEYLAAL RSIMPEAYVQ  120
RGDQASIVGG AIEFVKELEQ QVQCLEAQKR KLLVHQRVAA AKPADATPMR ASSSGARACC  180
ADSAAAAATT SNCSSGLTTE DAAADHALPP PPFAQFFTYP QYVWCHSAAR DPAEEEDGRR  240
SGVADVEVTL VETHASVRVM TARRPGQLLS LVTGLQALRL AVLHLSVVTA LDALVLYTTS  300
VKVHNCTKKV EEGCGLATAD DIAAAVHHVL CIIDAEATEQ QLLAAAGPQP Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973RKRRR
26976RKRRRRPR
38899RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.969010.0cell lignification| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111146
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111146_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350320.0BT035032.1 Zea mays full-length cDNA clone ZM_BFb0033F17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681358.10.0PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLA0A096RST00.0A0A096RST0_MAIZE; Uncharacterized protein
STRINGGRMZM2G111146_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.14e-47beta HLH protein 71