PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111123_P01
Common NameLOC100273773
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 253aa    MW: 28846.8 Da    PI: 6.5219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111123_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.1e-16155245199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f + +t s+v+   +l lpk+f++eh  k  ++ t+tl de+  +s +++l       +  l++GWkeF+ +++L +gD +vF+l++r++f 
  GRMZM2G111123_P01 155 FTQPMTLSHVSGGFWLGLPKHFCREHLPK--SDETITLVDEEDdESDTFYL--A---MQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKF- 238
                        67788999******************533..55699999*65526666777..2...33349************************98888. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                         +v ++r+
  GRMZM2G111123_P01 239 -KVYIIRA 245
                        .9998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-22148245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-19150246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-24153244No hitNo description
PROSITE profilePS5086311.434155246IPR003340B3 DNA binding domain
SMARTSM010191.0E-18155246IPR003340B3 DNA binding domain
PfamPF023621.1E-13155245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAEAVAVAYE EQRRRQIEMN KRKLEELQLH HLSAAVREAA AAAKPSSAKK RKAPVPRDAA  60
TEPPRRSDRL ANLPEKPMYR EVRVNLPFPE GSKSNARVPL DAANSVVVEP LRWSDRLANL  120
PKKPMYHEDS DEERSYAISK AEELVQELGS SFPIFTQPMT LSHVSGGFWL GLPKHFCREH  180
LPKSDETITL VDEEDDESDT FYLAMQAGLS TGWKEFAIQH KLLDGDCLVF QLIERTKFKV  240
YIIRATLYFE SDH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.852280.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111123
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111123_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417820.0BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141649.10.0B3 domain-containing protein
RefseqXP_008672457.10.0B3 domain-containing protein isoform X1
RefseqXP_008672458.10.0B3 domain-containing protein isoform X1
SwissprotQ69V367e-82Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLB4FXE40.0B4FXE4_MAIZE; B3 domain-containing protein
TrEMBLK0D9P90.0K0D9P9_MAIZE; ABI48 ABI3VP1 type transcription factor (Fragment)
STRINGGRMZM2G111123_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-45B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]