PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110107_P02
Common NameZm.100090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 483aa    MW: 52050.1 Da    PI: 9.519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110107_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-066789123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++Cg+ F r  nL+ H r+H
  GRMZM2G110107_P02 67 YVCEICGQGFQRDQNLQMHRRRH 89
                       9*********************9 PP

2zf-C2H211.70.00081146167223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C  C+k +  +s++k H++t+
  GRMZM2G110107_P02 146 ACARCSKAYAVHSDYKAHLKTC 167
                        6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.26E-56490No hitNo description
Gene3DG3DSA:3.30.160.602.7E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00326789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355180109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4136166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230145172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MLGFCAPSAC SPPDEATPEP FRSLQIATTV AAAAATTKKK RRPAGTPDPD AEVVSLSPRT  60
LLESDRYVCE ICGQGFQRDQ NLQMHRRRHK VPWKLLKREA GEAARKRVFV CPEPSCLHHH  120
PSHALGDLVG IKKHFRRKHS GQRQWACARC SKAYAVHSDY KAHLKTCGTR GHSCDCGRVF  180
SRVESFIEHQ DSCNAGQARA GAGVAAASAG SQQQAPPAMS LSRTASSTSP SSDIAISPVA  240
AWPAGPAPAI PSPASTAAFH WFEQVPSPRT PPPSVHHRGG HNLELQLMPP SCSGAGGDAP  300
PRTPAAPSQS HAAAMAMQLQ LSIGVCGDAG DEVLAAAREE EAREQLRQAV AEKAAADEAR  360
AQAKRQAELA ERELASAKRM RRQAQVELSR AHAVRDHALR QVNATLLQIT CLGCRHKFHA  420
RPQLDAVPAR WPAAAATCPP SMAFFLGLAE AEADPSSQQP MQMQMRQEQK RANNLAIVKR  480
FII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17141195357Zinc finger protein JACKDAW
5b3h_F3e-17141195357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KKKRR
23742KKKRRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110107
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110107_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9728310.0EU972831.1 Zea mays clone 388824 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460306.10.0protein indeterminate-domain 16
SwissprotQ9C9X71e-127IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A1D6ERC90.0A0A1D6ERC9_MAIZE; Protein SHOOT GRAVITROPISM 5
STRINGGRMZM2G110107_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.17e-99indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]