PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109480_P03
Common NameLOC100192994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 230aa    MW: 26142.1 Da    PI: 9.9667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109480_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.3e-15139224192
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k++++s+v +  +l lp +f+++++ k  ++ t+tl de+ ++++ ++    ++++  l++GW +F+  + +++gD+ vF+l++ ++f+ 
  GRMZM2G109480_P03 139 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDATITLVDEKDEEFDTNY--LAYKKG--LSGGWAGFALYHAIQDGDSTVFQLIKPTTFKV 224
                        89************************844..788****************..555555..9***********************99777744 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-17130225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-20132225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-21137225No hitNo description
PROSITE profilePS5086310.405139230IPR003340B3 DNA binding domain
PfamPF023621.6E-13139225IPR003340B3 DNA binding domain
SMARTSM010193.7E-13139230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEAAVAETQG MSPYEAARER NLQENKRKME ALNLRHLSAV IKEAPKTPSP MKPKRRRIIE  60
DAVVVPSPPR RSRRLANVPE VKYAEIAPHR ADRMTRSPRR PADLIYLARR GSISMKARLE  120
ATRKAEELES QLDPEIPSFV KAMLHSHVVR GFWLGLPSHF CDTYMPKQDA TITLVDEKDE  180
EFDTNYLAYK KGLSGGWAGF ALYHAIQDGD STVFQLIKPT TFKVLHAFSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.183750.0cell lignification| ear| embryo| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109480
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109480_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645408.11e-167PREDICTED: hypothetical protein isoform X1
SwissprotQ10QS91e-130Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A096RRL31e-171A0A096RRL3_MAIZE; Uncharacterized protein
STRINGGRMZM2G028794_P011e-145(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-47B3 family protein