PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109480_P01
Common NameLOC100192994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 146aa    MW: 16493.7 Da    PI: 6.0058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109480_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-1646136199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k++++s+v +  +l lp +f+++++ k  ++ t+tl de+ ++++ ++    ++++  l++GW +F+  + +++gD+ vF+l++ ++f  
  GRMZM2G109480_P01  46 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDATITLVDEKDEEFDTNY--LAYKKG--LSGGWAGFALYHAIQDGDSTVFQLIKPTTF-- 129
                        89************************844..788****************..555555..9***********************987777.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v+++r+
  GRMZM2G109480_P01 130 KVHIVRA 136
                        8888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-1937136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2339136IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-2444135No hitNo description
SMARTSM010195.5E-1646137IPR003340B3 DNA binding domain
PfamPF023628.1E-1546136IPR003340B3 DNA binding domain
PROSITE profilePS5086311.4246137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MTRSPRRPAD LIYLARRGSI SMKARLEATR KAEELESQLD PEIPSFVKAM LHSHVVRGFW  60
LGLPSHFCDT YMPKQDATIT LVDEKDEEFD TNYLAYKKGL SGGWAGFALY HAIQDGDSTV  120
FQLIKPTTFK VHIVRAATDD SSEVDE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.183750.0cell lignification| ear| embryo| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109480
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109480_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
GenBankBT0351340.0BT035134.1 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645408.11e-107PREDICTED: hypothetical protein isoform X1
SwissprotQ10QS91e-85Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLC4J9031e-107C4J903_MAIZE; Uncharacterized protein
STRINGSi037266m7e-94(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-44B3 family protein