PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G107276_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 267aa    MW: 28317.1 Da    PI: 12.0347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G107276_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14149195354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+h+e+Er RR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  GRMZM2G107276_P01 149 RSHSEAERSRRQRINGHLAKLRSLLPNT-----TKTDKASLLAEVIEHVKEL 195
                        78*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.628146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.93E-14149198No hitNo description
PfamPF000101.3E-11149195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14149209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13150206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-13152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MWEGGGSHAH EALLLQAAGS GAADYGHAGP SLLRPWLGPA AASGFSYMAP NHAQPGPLGA  60
EAAVASRFGF GGGGYSDGGV EQEQFVVIGS AETVPPRHSL QAAGVGGRTT ALLPHGPRMV  120
SGLLGTLQAE LGRMTAKEIM DAKALAASRS HSEAERSRRQ RINGHLAKLR SLLPNTTKTD  180
KASLLAEVIE HVKELKRQTS AAARQRHLLL PTEADDLFGG RRGGRRRRQA RRAGVAVLRG  240
PRGPHPRHRP RARRAQPAGP PRRDRHA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G107276
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G107276_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096161e-100AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678584.19e-82PREDICTED: transcription factor AIG1-like
TrEMBLA0A096RPZ80.0A0A096RPZ8_MAIZE; Uncharacterized protein
STRINGGRMZM2G107276_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
MonocotsOGMP2467556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-28bHLH family protein