PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106673_P03
Common NameABI14, IDP386, ZEAMMB73_261802
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 158aa    MW: 18257.9 Da    PI: 8.0393
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106673_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-1473156190
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+k +t+s+v+   +l lp +f++++  +k ++ ++tl de+  + +  +   k++    l++GW++F+ +++L +gD +vF+l+++++f
  GRMZM2G106673_P03  73 FIKPMTQSHVTGGFWLGLPIHFCRKYL-PK-RDEMITLVDEDDDESDTLYLAMKRG----LSAGWRGFAVQQKLVDGDCLVFQLIEQTKF 156
                        89************************5.33.5569********9999999444444....9***********************987776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1765157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-2066156IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-2071157No hitNo description
SMARTSM010191.9E-1173157IPR003340B3 DNA binding domain
PROSITE profilePS508639.93973158IPR003340B3 DNA binding domain
PfamPF023621.4E-1273156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEPVRRSGRL ANLPDKPVYR EKVPDFGMKI RRTYGSVRRD LTNRVYATDD ARSYAISKAE  60
DLEQELDSSF PIFIKPMTQS HVTGGFWLGL PIHFCRKYLP KRDEMITLVD EDDDESDTLY  120
LAMKRGLSAG WRGFAVQQKL VDGDCLVFQL IEQTKFKC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.729640.0aerial organ| cell culture| embryo| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106673
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106673_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9595540.0EU959554.1 Zea mays clone 218541 mRNA sequence.
GenBankBT0654760.0BT065476.2 Zea mays full-length cDNA clone ZM_BFb0176M17 mRNA, complete cds.
GenBankBT0647750.0BT064775.1 Zea mays full-length cDNA clone ZM_BFb0126B04 mRNA, complete cds.
GenBankBT0374440.0BT037444.1 Zea mays full-length cDNA clone ZM_BFb0169I10 mRNA, complete cds.
GenBankKJ7268800.0KJ726880.1 Zea mays clone pUT3421 ABI3VP1 transcription factor (ABI14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676667.11e-116PREDICTED: uncharacterized protein LOC100216848 isoform X1
RefseqNP_001136712.11e-116uncharacterized protein LOC100216848
SwissprotQ69V362e-84Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLB4FK061e-116B4FK06_MAIZE; ABI3VP1 transcription factor
STRINGGRMZM2G106673_P021e-115(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-54B3 family protein