PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G103647_P01
Common NamebZIP17, LOC100284034, ZEAMMB73_544155
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 282aa    MW: 30142.3 Da    PI: 4.9353
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G103647_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.52.3e-16120172355
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                        e kr rr+ +NRe+ArrsR+RK+a++  Le  v+ L++eN +L ++l+  +++
  GRMZM2G103647_P01 120 ETKRIRRMVSNRESARRSRRRKQAQLSDLESQVERLKGENATLFQQLSDANQQ 172
                        579****************************************9776665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-16118182IPR004827Basic-leucine zipper domain
PfamPF001702.3E-14120172IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.312120172IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-14122173No hitNo description
SuperFamilySSF579592.13E-12122173No hitNo description
PROSITE patternPS000360125140IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MKKCASELEL EAFIRESGED ARAAAGGSSP GCGGSSDPGG SGVFSPGFGF ADSDTMDGGS  60
WWYGNVRTPN PVMSQAASIS ASPGLTTSAN HALESESDSD SESLYEVEGV PYERGNRSIE  120
TKRIRRMVSN RESARRSRRR KQAQLSDLES QVERLKGENA TLFQQLSDAN QQFSTAVTDN  180
RILKSDVEAL RIKVKMAEDM VARSAVSCGL GDLGLAPYVN SRKMCQALNV LTGLDLLGSD  240
AFRGPTAGTR VQNSPVQSTA SLESLDNRKS NEVTSCAADI WP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134141RRSRRRKQ
2136141SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.102930.0cell culture| ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G103647
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G103647_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0618210.0BT061821.1 Zea mays full-length cDNA clone ZM_BFb0185P06 mRNA, complete cds.
GenBankEU9668410.0EU966841.1 Zea mays clone 297691 light-inducible protein CPRF-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150404.10.0uncharacterized protein LOC100284034
SwissprotQ654B38e-99RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBLB6TPC60.0B6TPC6_MAIZE; BZIP transcription factor
STRINGGRMZM2G103647_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Representative plantOGRP69561017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-29basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Liu C,Wu Y,Wang X
    bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.
    Planta, 2012. 235(6): p. 1157-69
    [PMID:22189955]