PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G101350_P03
Common NameZm.161291
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 340aa    MW: 35457.1 Da    PI: 7.5968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G101350_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09156203455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  GRMZM2G101350_P03 156 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 203
                        8*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.85E-10150207No hitNo description
SuperFamilySSF474591.83E-16150217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16152214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MARCQGTVES LCQGLLDLDD DKFGAMCSAF GYLQEWPDLG AAMCGANLAV PPAVATPSAG  60
DGNDSSSCSV SGGLRKRRPD AYLDAKGGAN GMNKRPRGKQ QPSGLSEIAA APGKGKQERP  120
KAGTKKKAEA AAAAAAAGQK TDYIHVRARR GQATDSHSLA ERVRRERISE RMRYLQELVP  180
GCSKVTGKAG MLDEIINYVQ SLQKQVEFLS MKIAASNPVV SFDIVEDLFG RQLKQACGPA  240
AGQLEPSCLQ MSMSPMQQVV HPSAAAGSTG FGPLDMVLSN LYAPAAASCP VSAAPSVSVA  300
AGPSTIEPCL NVNGTAAAWD IGSQNLFSGF DAQFQSVESE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G101350
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G101350_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9685570.0EU968557.1 Zea mays clone 322246 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288445.10.0transcription factor bHLH49
SwissprotQ8GY612e-48BH063_ARATH; Transcription factor bHLH63
TrEMBLA0A096RL270.0A0A096RL27_MAIZE; Uncharacterized protein
STRINGGRMZM2G101350_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.18e-37cryptochrome-interacting basic-helix-loop-helix 1