PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100313_P01
Common NameZEAMMB73_198325
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 78aa    MW: 9151.04 Da    PI: 11.8442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100313_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.0001527631855
                       HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        ++ eL++++ +    +  +K +   +L++A eYI+ L+
  GRMZM2G100313_P01 27 RRLRELKKVIVPeE--GARRKATADVVLRQAAEYICALE 63
                       57889999998845..67777999999********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-4670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MVALEKRSRI SKRMVSRRRH FQLMVLRRLR ELKKVIVPEE GARRKATADV VLRQAAEYIC  60
ALELKVAVLR RVSDMYGV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100313
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100313_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678472.19e-46PREDICTED: uncharacterized protein LOC103653315
TrEMBLK7UDD11e-47K7UDD1_MAIZE; Uncharacterized protein
STRINGGRMZM2G100313_P014e-47(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP568856