PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098063_P01
Common NameLOC103643729, Zm.128810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 324aa    MW: 36867 Da    PI: 8.6599
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098063_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.7e-19361141295
                        HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         + rl +p kf++++  g+++ +   +tle++ grs+ v++    + g++vl++GWkeFv a+gL  gD++vFk+dg+ +   +v 
  GRMZM2G098063_P01  36 FRERLAVPDKFMQHFtrGLVT-S--SVTLESRCGRSFHVQV--AENLGKVVLQAGWKEFVAAHGLSMGDVLVFKHDGTPRL--KVF 114
                        4568********666988884.3..5***************..*******************************8774333..444 PP

2B349.57.8e-162383231299
                        HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        + +++ +p+ +a+ +       e++tltl+ + g+sWev+++++k++++   l++GW++F+++n+L+ gD ++F+l ++ s+ ++ v+v+r+
  GRMZM2G098063_P01 238 S-QNMAIPRAYADVYlpF----EDRTLTLQ-RCGESWEVQCRIQKGRRGcKRLAQGWRQFAHDNKLQLGDLCLFELLENtSKYTMDVHVVRA 323
                        3.4599******888532....45588866.59********99777777789***********************99888999999999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2122121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-2024125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.77425119IPR003340B3 DNA binding domain
CDDcd100176.15E-2026117No hitNo description
PfamPF023626.1E-1628114IPR003340B3 DNA binding domain
SMARTSM010198.7E-928119IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-19219322IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-21220323IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-8224324IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042226324IPR003340B3 DNA binding domain
CDDcd100171.05E-16228319No hitNo description
PfamPF023623.8E-14237323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMKPGERSRE RDADFHYSGH DDEKDRYFFK VLVGDFRERL AVPDKFMQHF TRGLVTSSVT  60
LESRCGRSFH VQVAENLGKV VLQAGWKEFV AAHGLSMGDV LVFKHDGTPR LKVFMFDHSC  120
CEKVPPPCPV KIKREHHVCG GERRETHPEV PSSSCGDASM TFVTASSSSA SPSDDASGEW  180
ILSPEDQKPR YVPGYILPNG TYLTCVQMQK LKERVRARTS TIPIYGCTVR KSNIRRGSQN  240
MAIPRAYADV YLPFEDRTLT LQRCGESWEV QCRIQKGRRG CKRLAQGWRQ FAHDNKLQLG  300
DLCLFELLEN TSKYTMDVHV VRAE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1288100.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098063
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098063_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9725620.0EU972562.1 Zea mays clone 383525 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665122.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
RefseqXP_008665123.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A096RIV10.0A0A096RIV1_MAIZE; Uncharacterized protein
STRINGGRMZM2G098063_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5872421
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-11B3 family protein