PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G094892_P02
Common NameLOC100382992
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 396aa    MW: 40372.3 Da    PI: 6.3099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G094892_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-05294334954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+r+ +++  L++l+P        +++ a++L +A  Y+k L
  GRMZM2G094892_P02 294 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAAGYLKFL 334
                        599*****************95.....59***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.827285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-12291345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-8291339No hitNo description
SMARTSM003536.3E-10291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-8291345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEDFGGWNMQ YAAELCLPSR RDDDDDGLLG DFLGGGGLDI RSDHGGLNLP SSHPAVQNLV  60
PCHGGVSLSV SDAFMGLDTA DMLASVTGAL DCSLLDTFAC GSDAVVVAEE PAAQPTASSN  120
AFSGYSSTTG GNYGNISSGE SNTYGGSGGG HDTEVASPTC ASKRKLAGKY PAIAAASATA  180
TTKTAEGQVA APRRGTKRDS ATSSSSTSAT VAGHGGGNHA AGGGGSSSVG DGNGYEPDSE  240
AIAQVKEMIY RAAAMRPVHQ LVCGAAGGEP PSSSQNKPRR RNVRISSDPQ TVAARLRRER  300
VSERLRVLQR LVPGGSRMDT ASMLDEAAGY LKFLKSQVKA LERANPSSNG GYNDSSFLPQ  360
SYTGCLGVDG GTSAAFGSDG AIGGYGYVKP GRNMHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299RLRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G094892
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G094892_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663020.0BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648092.10.0PREDICTED: uncharacterized protein LOC100382992 isoform X1
RefseqXP_008648093.10.0PREDICTED: uncharacterized protein LOC100382992 isoform X1
RefseqXP_008648094.10.0PREDICTED: uncharacterized protein LOC100382992 isoform X1
RefseqXP_008648095.10.0PREDICTED: uncharacterized protein LOC100382992 isoform X1
TrEMBLC0PDD30.0C0PDD3_MAIZE; Uncharacterized protein
STRINGGRMZM2G094892_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-27bHLH family protein