PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G093895_P01
Common NameLOC100384575, TCP12, ZEAMMB73_979189
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 405aa    MW: 41090.9 Da    PI: 6.1047
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G093895_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.81.1e-391012083105
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                        ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ +  + s +s a+++ ++     
  GRMZM2G093895_P01 101 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAPAARaapfp 192
                        789************************************************************99999766333333333332222233333 PP

                TCP  89 ..............kaaksaakskksqksaa 105
                                      +               +
  GRMZM2G093895_P01 193 alalhphhhhqaapA---------------H 208
                        322222221111110...............1 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-35106210IPR005333Transcription factor, TCP
PROSITE profilePS5136928.31106160IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDHGGGGGGG GAPSSSNSAG GAAAGGGATA GGASGGRGSE HHPFYYAGPA ASNSGVPQAQ  60
QQPSPFAGAL AIAPVPEQPQ PSSADKKALV PAAPAAAGPV VAKRPSKDRH TKVDGRGRRI  120
RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAILAA TGTGTIPANY SSLNISIRSG  180
AAAPAARAAP FPALALHPHH HHQAAPAHDM SAMMAGYHHH LLPPQPQPQE DPSAGDAYMR  240
KRYREDLFKE DDERQDPSAP KAREQQAATP PPQPQPSATM WAAAAPSGGF WMLPVSASSA  300
AAARPAEQPM WSFSGGGGTG TVQAPLQFMS RASYPGGAAG GGGGAMSDTN LGMLAALNAY  360
NRGGSEEQQQ TEGEQQHGGD GGVNDDGDED GDDSAEENNG NNSSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.850850.0ear| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G093895
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G093895_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836910.0BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170554.10.0uncharacterized protein LOC100384575
SwissprotQ53PH22e-63PCF3_ORYSJ; Transcription factor PCF3
TrEMBLC4IYP40.0C4IYP4_MAIZE; TCP transcription factor
STRINGGRMZM2G093895_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-43TCP family protein