PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G093744_P01
Common NameLOC100280093, ZEAMMB73_336501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 257aa    MW: 28178.9 Da    PI: 5.0503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G093744_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-0991138454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++  rE+ RR+++N++f eL + l +    +  K +Ka+iL  A++ + +L
  GRMZM2G093744_P01  91 SKASREKMRRNKLNDRFLELGSTLEPG---KPVKADKAAILSDATRMVIQL 138
                        6778**********************9...99*************988777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.66887138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1290157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.09E-790143No hitNo description
PfamPF000105.5E-791138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1292161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-893144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0001052developmental stagevascular leaf expansion stage
PO:0007063developmental stageLP.07 seven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSLAPDPADG GAGTGTGDDW FLDCGILDDL PAAACGAFPW DASPSSSNPS VEVGSYVNTN  60
DVFKEPNDVF KEPGSNKRLR SGFNDVHVPT SKASREKMRR NKLNDRFLEL GSTLEPGKPV  120
KADKAAILSD ATRMVIQLRS EAQQLKETNG SLEEKIKELK AEKDELRDEK QKLKLEKESL  180
EHQMKLMTST PTYMPHPTLM PAPFPQAPLA PFHAQGQAAG QKLMMPFVSY PGYPMWQFMP  240
PSEVDTSKDS EACPPVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.814050.0cell culture| ear| embryo| endosperm| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G093744
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G093744_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750690.0EU975069.1 Zea mays clone 466532 bHLH transcription factor mRNA, complete cds.
GenBankBT0702070.0BT070207.1 Zea mays full-length cDNA clone ZM_BFc0171L14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146503.10.0uncharacterized protein LOC100280093
SwissprotQ9FH375e-67ILR3_ARATH; Transcription factor ILR3
TrEMBLK7TR690.0K7TR69_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G093744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7551766
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-43bHLH family protein