PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G090595_P01
Common NameLOC542197
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 385aa    MW: 42332.4 Da    PI: 11.7756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G090595_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-0694116123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F r  nL+ H r H
  GRMZM2G090595_P01  94 FVCEVCNKGFQREQNLQLHRRGH 116
                        89*******************88 PP

2zf-C2H212.30.00051171193123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +++
  GRMZM2G090595_P01 171 WKCDKCSKRYAVQSDWKAHSKVC 193
                        58*****************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-693116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-793116No hitNo description
PROSITE profilePS5015711.09494116IPR007087Zinc finger, C2H2
PfamPF121712.3E-594116IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004194116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM00355290136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-4159191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-7166191No hitNo description
SMARTSM00355140171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MASNSSAAAV AAMFGIRDAD HQDQMKPLLA QQHQHQHQHQ MPPAPLLNAA SSSAGPGQAA  60
GATPPAVKKK RNLPDPDAEV IALSPKTLLA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW  120
KLKQKDPSQA QRRRVYLCPE PTCAHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY  180
AVQSDWKAHS KVCGTREYRC DCGTLFSRRD SFITHRGFLR RPRAGERPGC RPQASPPATS  240
TAPPTRPTWG SASRRSVPTS HPHSVRTLTA TIRTSSGSVA ATPRAALSIF WGRPTPPRSG  300
PCRLHHRRHF SWALRRSLAQ ATAAGPTGSC RASRSTVSCI CRISKATAPG VPRRRRLRVS  360
STLATSQTVQ TAQVLPAMAM QARDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-28167218354Zinc finger protein JACKDAW
5b3h_F2e-28167218354Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.198240.0endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G090595
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G090595_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542580.0BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.21e-161INDETERMINATE-related protein 10
TrEMBLB7ZY661e-160B7ZY66_MAIZE; Indeterminate domain p10
STRINGGRMZM2G090595_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-96indeterminate(ID)-domain 2