PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089782_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 345aa    MW: 37232.6 Da    PI: 7.7965
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089782_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.52.3e-2412221940135
               GRAS  40 RlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129
                         +aay   A +  lar ++ ++++  p+e ++     ++ ++al++++ v+Pi++f h+t N+ +l a++g+++vH+iDfdi+qGlQWp+Ll
  GRMZM2G089782_P01 122 SVAAYNHDATNYYLARLGEMVFNISLPREITNGAvaIADDAMALRVLNVVTPIPRFLHFTLNERVLCAFDGHDCVHVIDFDIKQGLQWPSLL 213
                        68999999999999999999999998888886667789999*************************************************** PP

               GRAS 130 qaLasR 135
                        q L+ R
  GRMZM2G089782_P01 214 QILTMR 219
                        ***999 PP

2GRAS63.15.6e-20222315259352
               GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                        +al+yy+a fd + +a+l+ +s +r+k E++ ++rei+n+va e a+r+erhet++ Wr r++e  F++  +++++a q  ++ r+++   y
  GRMZM2G089782_P01 222 RALRYYVAAFDVVeAAGLADASPARAKAEEM-FAREIRNAVAFEAADRFERHETFAGWRWRMQEGRFQNTGIGDREALQGCMIARMFAPGNY 312
                        69***********8899**************.*******************************************************94448 PP

               GRAS 350 rve 352
                        +++
  GRMZM2G089782_P01 313 SMQ 315
                        776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.96160345IPR005202Transcription factor GRAS
PfamPF035148.1E-22122219IPR005202Transcription factor GRAS
PfamPF035142.0E-17222315IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MALCGRGAGP LSGPMRRTRA RRTAQAVGSD DGDKAEEEKA FLVPSAAVFP HGMSAAAAGL  60
SLAVAKKKEF SKSPSNSMAS SGGTDGGSSV VLWPEQLHAQ NGAPARVEAM EPVIALTACT  120
NSVAAYNHDA TNYYLARLGE MVFNISLPRE ITNGAVAIAD DAMALRVLNV VTPIPRFLHF  180
TLNERVLCAF DGHDCVHVID FDIKQGLQWP SLLQILTMRG SRALRYYVAA FDVVEAAGLA  240
DASPARAKAE EMFAREIRNA VAFEAADRFE RHETFAGWRW RMQEGRFQNT GIGDREALQG  300
CMIARMFAPG NYSMQALLSY GTNAGAGVLI LYCSFSVQCF KLALK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.342991e-103cell lignification| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089782
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089782_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698761e-101BT069876.2 Zea mays full-length cDNA clone ZM_BFb0307D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676018.11e-112PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 28
TrEMBLA0A096RDI50.0A0A096RDI5_MAIZE; Uncharacterized protein
STRINGGRMZM2G089782_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.13e-23GRAS family protein