PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089361_P01
Common NameLOC103625824, Zm.143980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 381aa    MW: 39053.2 Da    PI: 10.1628
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089361_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.16.5e-38601862128
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssgka 90 
                         g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a +ai++l+++  ++a ++           a+ + ++++
  GRMZM2G089361_P01  60 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAAAIDKLPEL-DPAA-FAalpA--PGDADAAGKDKQQQ 147
                        689*************************************************************.4444.333442..33333333333344 PP

                TCP  91 aksaakskksqksaasalnlak.esrakarararertre 128
                         +++a s+ s++s+ s l+l++ +sr  a+ar re t  
  GRMZM2G089361_P01 148 GSKSAGSSTSETSKGSELSLSRsDSRGGASARDREVTVA 186
                        455556666777777779999999********9997655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3461181IPR005333Transcription factor, TCP
PROSITE profilePS5136933.34362120IPR017887Transcription factor TCP subgroup
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEAAAVGAGA PGRSQQQGSK RGRGGAVRGS EAEAAWGQPP PPPPPLGPGA GSRIYRVRAS  60
GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD QPSKAIEWLI NAAAAAIDKL  120
PELDPAAFAA LPAPGDADAA GKDKQQQGSK SAGSSTSETS KGSELSLSRS DSRGGASARD  180
REVTVASTSA QAASFTELLT GVASAGAISA AEHRQSWHHQ PNVSAAAAGC VGIAHNGKGA  240
HGLSTHAFSG PAAAKFGSAP PFGLVPAQPF NFTSPIEMPH FSLGQDTLAA SSAAAGDYSL  300
GFSMSSGFLG ASRGTLQSNS QSNFSGHHHH QLQRLDGPLL FGHVHGAAVA HPASENQLTS  360
SAALQLWDGL RHSGMKEKSK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2667121155Putative transcription factor PCF6
5zkt_B3e-2667121155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.803850.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089361
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089361_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565950.0EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644443.10.0transcription factor PCF6
SwissprotQ10CE81e-107PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A1D6GG320.0A0A1D6GG32_MAIZE; Transcription factor TCP2
STRINGGRMZM2G089361_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-29TCP family protein