PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088440_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 182aa    MW: 21139.2 Da    PI: 9.1048
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088440_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP66.11.2e-201542271
                TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssas 71
                       +Rls+ +a++fF+Lqd+LGfdk+ kt++WLl q+kpai+ l++     ++ s++
  GRMZM2G088440_P01  1 MRLSVGVAREFFKLQDRLGFDKANKTVNWLLAQSKPAIDRLNRIigveKTASQQ 54
                       8****************************************9996655222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136922.766141IPR017887Transcription factor TCP subgroup
PfamPF036344.1E-18158IPR005333Transcription factor, TCP
SMARTSM002711.8E-173997IPR001623DnaJ domain
PROSITE profilePS5007618.48640105IPR001623DnaJ domain
PRINTSPR006252.7E-174260IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.3E-2343130IPR001623DnaJ domain
SuperFamilySSF465657.85E-2243127IPR001623DnaJ domain
CDDcd062579.21E-184494IPR001623DnaJ domain
PfamPF002263.1E-2144102IPR001623DnaJ domain
PRINTSPR006252.7E-176075IPR001623DnaJ domain
PRINTSPR006252.7E-177797IPR001623DnaJ domain
PRINTSPR006252.7E-1797116IPR001623DnaJ domain
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRLSVGVARE FFKLQDRLGF DKANKTVNWL LAQSKPAIDR LNRIIGVEKT ASQQEIKKVY  60
HKLALRLHPD KNPGDEETKE KFQLLQKVIS ILGDAEKRAL YDETGITDDD ALVGEAANNL  120
QEYFRTMYKK VMEANIEEFE VKYRGSDSEK MDLKELYTKY KGNMNRNSYL LYHIVKSETV  180
LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dmx_A2e-16441061477DnaJ homolog subfamily B member 8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.944470.0cell culture| embryo| leaf| meristem| ovary| pericarp| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088440
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves, flowers and siliques, and to lower extent in roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtHave a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088440_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417690.0BT041769.1 Zea mays full-length cDNA clone ZM_BFb0049O18 mRNA, complete cds.
GenBankBT0681550.0BT068155.1 Zea mays full-length cDNA clone ZM_BFb0066J15 mRNA, complete cds.
GenBankEU9647110.0EU964711.1 Zea mays clone 281006 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150767.11e-77chaperone protein dnaJ 6
SwissprotQ9FL545e-52DNAJ6_ARATH; Chaperone protein dnaJ 6
TrEMBLA0A3L6FXZ52e-95A0A3L6FXZ5_MAIZE; Chaperone protein dnaJ 6
STRINGGRMZM2G088440_P011e-131(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-12TCP family protein
Publications ? help Back to Top
  1. Miernyk JA
    The J-domain proteins of Arabidopsis thaliana: an unexpectedly large and diverse family of chaperones.
    Cell Stress Chaperones, 2001. 6(3): p. 209-18
    [PMID:11599562]