PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088140_P03
Common Namepco120282(609), ZEAMMB73_077557
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 376aa    MW: 39989.7 Da    PI: 7.4988
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088140_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.62.1e-21279341163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e elk++rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s +
  GRMZM2G088140_P03 279 EHELKKQRRKQSNRESARRSRLRKQAECEELAQRADVLKQENASLRDEVNRIRKEYEELLSRN 341
                        679********************************************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-27189IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.4E-32128252No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-17273337No hitNo description
PfamPF001701.1E-19279341IPR004827Basic-leucine zipper domain
SMARTSM003383.4E-20279343IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.208281344IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.25E-11282338No hitNo description
CDDcd147023.29E-25284334No hitNo description
PROSITE patternPS000360286301IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGSSGADTPS KEQQPPATSG AAIPPVYPDW SSFQAYPPIP PHGFFPSPVA SSPQGHPFMW  60
GAQAMIPPYG TPPPYVMYPP GVYAHPSMPP GAHPFTPYAI TSPNGNADAT GTTVAAGNTD  120
GKPSEGKDKS PTKRSKGSLG SLNMLTGKNP SEHGKSSGAS GNGVTSQSGE SGSDSSSEGS  180
EGNSHNDSHH KESGQEHDGD VRSSRNGVSR LQSEGKLNQA MAILPIPSSG PATDPTTNLN  240
IGMDYWANTA SSAPAIHGKA TSTTVPGAVV PAEQWTQDEH ELKKQRRKQS NRESARRSRL  300
RKQAECEELA QRADVLKQEN ASLRDEVNRI RKEYEELLSR NNSLKEKLEG KQHKTDEAGL  360
NNKLQHSGDD SQKKGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295301RRSRLRK
2295302RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.133970.0embryo| meristem| pedicel| pericarp| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088140
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088140_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0360320.0BT036032.1 Zea mays full-length cDNA clone ZM_BFb0092L16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132261.10.0uncharacterized protein LOC100193697
RefseqXP_020400477.10.0uncharacterized protein LOC100193697 isoform X1
RefseqXP_020400478.10.0uncharacterized protein LOC100193697 isoform X1
RefseqXP_020400479.10.0uncharacterized protein LOC100193697 isoform X1
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLB4FFZ40.0B4FFZ4_MAIZE; Uncharacterized protein
TrEMBLK4JRP30.0K4JRP3_MAIZE; BZIP-type transcription factor (Fragment)
STRINGGRMZM2G088140_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-87basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]