PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G086768_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 303aa    MW: 34225.6 Da    PI: 7.7138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G086768_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.33.1e-32581961128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....s 80 
                        lp+G++F+P+d+el+++ ++k+  ++       ++++   ++e  +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r ++    +
  GRMZM2G086768_P01  58 LPKGVKFDPSDQELIWHLMAKH-GKSGikphpfIDEFIPtVEEDeGICYTHPQKLP-GVKQNGSVSHFFHRTFKAYNTGTRKRRRINtddaD 147
                        799************7666554.44443555442322222333336**********.667778899*****************964434667 PP

                NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         +W++tgk+k+vl+ +g++ g+kk++v+y    +  k+ekt+Wv+h+y+l
  GRMZM2G086768_P01 148 VRWHKTGKTKPVLV-DGKHLGCKKIMVLYisPLKGGKAEKTNWVIHQYHL 196
                        89************.999***********6523777778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-3742215IPR003441NAC domain
PROSITE profilePS5100530.84958215IPR003441NAC domain
PfamPF023651.1E-1359196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTGTTWIIDS QRFATKIKNA SGSLDPSKQK WIGNPSKECP KCSHVIDNSD VVHQWPGLPK  60
GVKFDPSDQE LIWHLMAKHG KSGIKPHPFI DEFIPTVEED EGICYTHPQK LPGVKQNGSV  120
SHFFHRTFKA YNTGTRKRRR INTDDADVRW HKTGKTKPVL VDGKHLGCKK IMVLYISPLK  180
GGKAEKTNWV IHQYHLGTGE DERDGEYVVS KLFFQQQFKP GDKNAQELTT SDDLESMAAE  240
SNLPDFTTLP TDKHVGTVQE VVHNPEHNLY QLNRNCEISI EETVVLPPSG KTTKDGYNLQ  300
SQD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139RKRRR
2136140KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.202690.0meristem| ovary| pollen| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G086768
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G086768_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558620.0BT055862.1 Zea mays full-length cDNA clone ZM_BFb0341H11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146652.10.0putative NAC domain transcription factor superfamily protein
SwissprotQ6NQK21e-112NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A096RBI10.0A0A096RBI1_MAIZE; Uncharacterized protein
STRINGGRMZM2G086768_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Representative plantOGRP82641016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-113NAC family protein