PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G085751_P01
Common NamebHLH24, LOC100194372, ZEAMMB73_451356
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 375aa    MW: 39426.5 Da    PI: 8.9644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G085751_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13112162255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  GRMZM2G085751_P01 112 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 162
                        789*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.57E-13108166No hitNo description
PROSITE profilePS5088815.237110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-17110183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-13111164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007022developmental stageseed imbibition stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEDGGMCELV IGDHRNLRHR LSGAEDLFSI VGTWEERTNG ASGGGGGGGG SSAAAVRAYS  60
QGCTAGTAGA KTAAGTNNSR RRTGDEEKGG SAPAQKKHKG SSAVSDDEGA AKMSHITVER  120
NRRKQMNEHL AVLRSLMPCF YVKRGDQASI IGGVVDYIKE LQQVLRSLET KKHRKAYAEQ  180
VLSPRPLPAV KSTPPLSPHV AVPMSPRTPT PGSPYKPASG AAATTTGSCR LPHRAAAAAA  240
AYIGTPTTSS SSSSYSHDQQ RHYSTYLPTL DSLVTELAAQ AAACSRPAAS GGLTRLPDVK  300
VEFAGPNLVL KTVSHRSPGQ ALKIIAALES LPLEILHVSV STVDDTMVHS FTIKIGIECE  360
LSAEELVQEI QQTLL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.322130.0cell lignification
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G085751
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G085751_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369010.0BT036901.1 Zea mays full-length cDNA clone ZM_BFb0146M03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132879.10.0putative HLH DNA-binding domain superfamily protein
SwissprotQ700C71e-81SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLB4FIG30.0B4FIG3_MAIZE; BHLH transcription factor
STRINGGRMZM2G085751_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-42bHLH family protein