PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G085467_P02
Common NameLOC100284866, Zm.31290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 408aa    MW: 42596.8 Da    PI: 8.7786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G085467_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13337382655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR +i +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  GRMZM2G085467_P02 337 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 382
                        689*********************7....467*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16334394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-13335386No hitNo description
Gene3DG3DSA:4.10.280.102.5E-15336393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-10337382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MYGAPLPKDL NLPAALPQPT RTPPQQQMGS PGLLRYRSAP STLLGEVMCG GDQDFPAAGG  60
AGHGPPDHAA ADNVLARFLA GHHSETRDCK PPRPAAAAHF MDEAAVASMA ASQQQQLMYQ  120
SQQEQQMAAM EGLYRNVSSG GTEHGAAVGA GNNSLIRQSS SPAGFLNHLN MDNGYGSMLR  180
VGMGGGGFRN GVSDARLKGQ LSFSSRQGSV MSQISEVGSE ELDGGGGSGS PEAAGSNASG  240
AARGYSGIPG YPMGGLASGA WPDEASPSPT SGAKRPRDSG PALQQPLAPQ LSLPSGKNKG  300
GRAASAEMAA IEKFLQFQDA VPCKIRAKRG CATHPRSIAE RVRRTKISER IRKLQELVPN  360
MEKQTNTADM LDLAVDYIKD LQKQVKVLND GRASCTCSAG ELQGQFTR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G085467
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G085467_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699620.0EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151233.10.0helix-loop-helix DNA-binding domain containing protein
TrEMBLB6TY970.0B6TY97_MAIZE; Helix-loop-helix DNA-binding domain containing protein
STRINGGRMZM2G085467_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-50bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]