PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G082318_P01
Common NameGBP12, si687048c12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 374aa    MW: 40560.6 Da    PI: 5.7871
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G082318_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.11.5e-3479178297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 
                        lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye ++++++++++ksqlveK+rrLK+K++++v++ ++sg  ++f+++h+q if
  GRMZM2G082318_P01  79 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFTKSQLVEKLRRLKRKYRNCVSRlRESGATFTFRSPHEQAIF 170
                        79************************99877778***************************************8999*************** PP

             DUF573  90 elskkiWg 97 
                        e+++ iW+
  GRMZM2G082318_P01 171 EIARNIWR 178
                        *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.9E-3180177IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPPTGDDPPA SAGISFPDAD GGGDSEDGDF AGAHLLDPTD PGLPNPTTSS ATGLPHAIPA  60
AGSGGGPVTS GNGGERRPLF QRLWTEEDEI VILRGFAEFT AARGTAFASH QYDTDPFYED  120
MRRRLQLDFT KSQLVEKLRR LKRKYRNCVS RLRESGATFT FRSPHEQAIF EIARNIWRPT  180
NKHGRDPSAD SDDEDAAAAT QIPANTSPNG EAKSPSSTRQ RRRRRVMEFS PATGAAPATN  240
MLQPPQPVQL SVSVPVKMDD SLPAQPQTPM PVMVAMDGSE PLRLPVVSPQ SGVSDAEKTC  300
LTPLFKEMLR AAINVGANPF GAKLPEPPLG LAMEGEKWRK QRILELEVYL KRIELLQDQA  360
KATLEELKSS TPGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.963160.0embryo| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G082318
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G082318_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416520.0BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds.
GenBankEU9699720.0EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141580.10.0uncharacterized protein LOC100273696
TrEMBLA0A3L6E7220.0A0A3L6E722_MAIZE; Putative transcription factor
TrEMBLB4FX140.0B4FX14_MAIZE; GeBP transcription factor
TrEMBLK0DF300.0K0DF30_MAIZE; GBP12 GeBP type transcription factor (Fragment)
STRINGGRMZM2G082318_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.17e-48DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]