PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G081816_P01
Common NameLOC100192921
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 481aa    MW: 48730.4 Da    PI: 7.2859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G081816_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-07381421954
                        HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         r+RR+ri +++  L++l+P  a      K++ a++L +A  Y++ L
  GRMZM2G081816_P01 381 ARQRRERISDRLRVLQKLVPGgA------KMDTASMLDEAASYLRFL 421
                        69******************966......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-11378426No hitNo description
SMARTSM003538.0E-13378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-13378431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-11380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-5381421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDHNLSDMTI LSEHAWGDEA GAVLLSPPEV GSVIEGGGGM TVLERLVLDE ALAAAILELQ  60
AIQQAAPGPA SCAGKQQLAA GGGGGVVGAE AAVAFPSMMA MAMAAPTPAY ADADVDAGVL  120
QRQQHHHRPH AAMGMPSPDY DLAPAAAATP AVAVTAAAPP AFTTNTNAAV DSGCSGLVVL  180
GRSPPPPVFS ASNETAATAS LDCEHGGGGR GGGRRQRRPN RKRKAAAEAE RSRPVRVAAA  240
AAQEESTLCS LLASTAPTTA GGIQIAFSTA AVHQQQHAAG GAGGAKTSAK PSSLSLSSSG  300
SSSNISFDGR NPARNGGGGG GGDPVYEPDT EALAQVKEMI YRAAAMRPVS LGSEDDAGAG  360
AERPPRRRNV RISSDPQTVA ARQRRERISD RLRVLQKLVP GGAKMDTASM LDEAASYLRF  420
LKSQVRDLQT LDRRNYGAAS SNDAAATMAA VVGSSLSYNR GTGAMPAFTF PAAGETLRGA  480
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381386RQRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G081816
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G081816_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350330.0BT035033.1 Zea mays full-length cDNA clone ZM_BFb0033F20 mRNA, complete cds.
GenBankKJ7268570.0KJ726857.1 Zea mays clone pUT3398 bHLH transcription factor (bHLH25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008672097.10.0PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLA0A096R8E00.0A0A096R8E0_MAIZE; Uncharacterized protein
STRINGGRMZM2G081816_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1289345
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-38bHLH family protein